Raziskave

Reference:

SLO -US/19-21-021: Naravne celice ubijalke v imunoterapiji glioblastoma, z Univerzo v Kaliforniji Los Angeles (UCLA), ZDA, vodja Barbara Breznik in prof. Anahid Jewett v ZDA (2019-2021)

References:

• ISBE (Infrastructure for Systems Biology - Europe) – FP7 (2012-2015)
• DECHATLON (Development of Cost efficient Advanced DNA-based methods for specific Traceability issues and High Level On-site applicatioNs) – FP7 (in negotiation phase)
• CYTOTHREAT (Fate and effects of cytostatic pharmaceuticals in the environment and the identification of biomarkers for and improved risk assessment on environmental exposure) - FP7 (2011-2014)
• INTERFACES (Support for training and career development of researchers) – FP7 (2014-2017)
• ELIXIR (FP7 European life-sciences Infrastructure for biological Information); member

• Baebler Š., Stare K., Kovač M., Blejec A., Prezelj N., Stare T., Kogovšek P., Pompe-Novak M., Rosahl S., Ravnikar M., Gruden K.: Dynamics of responses in compatible potato-Potato virus Y interaction are modulated by salicylic acid. PLoS One. 2011; 6(12):e29009.
• Petek M., Turnšek N., Gašparič M.B., Novak M.P., Gruden K., Slapar N., Popovič T., Štrukelj B., Gruden K., Štrukelj B., Jongsma M.A.: A complex of genes involved in adaptation of Leptinotarsa decemlineata larvae to induced potato defense. Arch Insect Biochem Physiol. 2012 Mar; 79(3):153-81
• Ramšak Ž., Baebler Š., Rotter A., Korbar M., Mozetic .I, Usadel B., Gruden K.: GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology. Nucleic Acids Res. 2013; (doi:10.1093/nar/gkt1056).
• Miljkovic D., Stare T., Mozetič I., Podpečan V., Petek M., Witek K., Dermastia M., Lavrač N., Gruden K.: Signalling network construction for modelling plant defence response. PLoS One. 2012; 7(12):e51822.
• Bar-Dror T., Dermastia M., Kladnik A., Znidaric M.T., Novak M.P., Meir S., Burd S., Philosoph-Hadas S., Ori N., Sonego L., Dickman M.B., Lers A.: Programmed cell death occurs asymmetrically during abscission in tomato. Plant Cell. 2011 Nov; 23(11):4146-63.
• Steyer A., Gutiérrez-Aguire I., Kolenc M., Koren S., Kutnjak D., Pokorn M., Poljsak-Prijatelj M., Racki N., Ravnikar M., Sagadin M., Fratnik Steyer A., Toplak N.: High similarity of novel orthoreovirus detected in a child hospitalized with acute gastroenteritis to Mammalian orthoreoviruses found in bats in Europe. J Clin Microbiol. 2013 Nov;51(11):3818-25
• Erjavec J., Kos J., Ravnikar M., Dreo T., Sabotič J.: Proteins of higher fungi - from forest to application. Trends Biotechnol. 2012 May; 30(5):259-73.

Reference:

• SILMAS (Sustainable Instruments for lakes management in the alpine space) – Alpine Space (2009-2012)
• Alp-Water-Scarce (Alp-Water-Scarce Water Management Strategies against Water Scarcity in the Alps)- Alpine Space (2008-2011)
• HYDROKARST (Karst aquifer as a strategic cross-border water resource) - Slovenia- Italy Cross-Border Cooperation Programme (2012-2015)
• PESI (A Pan-European Species-directories Infrstructure) - FP7 (2008-2011)

• Kušar D., Vrezec A., Ocepek M., Jenčič V.: Aphanomyces astaci in wild crayfish populations in Slovenia: first report of persistent infection in a stone crayfish Austropotamobius torrentium population. 2013. Dis. aquat. org., 103:157-169.
• Galassi D.M.P., Stoch F., Brancelj A.: Dissecting copepod diversity at different spatial scales in southern European groundwater. 2013. J. Nat. Hist. 47: 821-840.
• Homburg K., Drees C., Gossner M. M., Rakosy L., Vrezec A., Assmann T.: Multiple glacial refugia of the low-dispersal ground beetle Carabus irregularis: molecular data support predictions of species distribution models. 2013. PloS one: 8: e61185.
• Brancelj A., Žibrat U., Mezek T., Rejec Brancelj I., Dumont H.: Consecutive earthquakes temporarily restructured the zooplankton community in an Alpine Lake. 2012. Ann. Limnol. 48: 113-123.
• Mori N., Simčič T., Žibrat U., Brancelj A.: The role of river flow dynamics and food availability in structuring hyporheic microcrustacean assemblages: a reach scale study. 2012. Fundam. appl. limnol. 180: 335-349.
• Simčič T., Pajk F., Vrezec A., Brancelj A.: Size scaling of whole-body metabolic activity in the noble crayfish (Astacus astacus) estimated from measurements on a single leg. 2012. Freshw. Biol. 57: 39-48.
• Tome D., Denac D.: Survival and development of predator avoidance in the post-fledging period of the Whinchat (Saxicola rubetra): consequences for conservation measures. 2012. J. Ornithol. 153:131-138.
• Bevk D., Kralj J., Čokl A.: Coumaphos affects food transfer between workers of honeybee. 2012. Apis mellifera. Apidologie. 43, 465-470
• De Groot M., Čokl A., Virant-Doberlet M.: Species identity cues: possibilities for errors during vibrational communication on plant stems. 2011. Behav. ecol. 22, 1209-1217.
• Stritih N., Čokl A.: Mating behaviour and vibratory signalling in non-hearing cave crickets reflect primitive communication of Ensifera. PloS one, 2012, 7(10) e47646.
• Virant-Doberlet M., King R. A., Polajnar J., Symondson W.: Molecular diagnostics reveal spiders that exploit prey vibrational signals used in sexual communication. 2011. Mol. ecol. 20 (10): 2204-2216.
• Zorović M.: Temporal processing of vibratory communication signals at the level of ascending interneurons in Nezara viridula (Hemiptera: Pentatomidae). 2011. PLOS One 6(10): e26843.
• Žunič A., Chinta S. P., Headrick D., Čokl A., Millar J. G.: Do chemical signals mediate reproductive behavior of Trupanea vicina, an emerging pest of ornamental marigold production in California?. Entomol. exp. appl. (Print), 2013, vol., no. , 13 str., [in press]
• Bluemel J. K., King R. A., Virant-Doberlet M., Symondson W. O. C.: Primers for identification of type and other archived specimens of Aphrodes leafhoppers (Hemiptera, Cicadellidae). 2011. Mol. ecol. resour., 11 (5), 770-774.
• Ray A. M., Žunič A.: 2,3-hexanediols as sex attractants and a female-produced sex pheromone for cerambycid beetles in the prionine genus Tragosoma. 2012. J. chem. ecol., 38 (9) 1151-1158.
• Mehle N., Ravnikar M.: Plant viruses in aqueous environment - survival, water mediated transmission and detection. Water Res. 2012 Oct 15;46(16):4902-17

Reference:

• MyOcean (Prototype Operational Continuity for the GMES Ocean Monitoring and Forecasting Service) – FP7 (2009-2012)
• SEADATANET (Pan-European infrastructure for ocean and marine data Management) – FP7 (2006-2011)
• RADAR (Rationally Designed Aquatic Receptors integrated in label-free biosensor platforms for remote surveillance of toxins and pollutants) – FP7 (2011-2014)
• PERSEUS (Policy-oriented marine Environmental Research in the Southern European Seas) – FP7 (2012-2015)
• SEADATANET II (Pan-European infrastructure for ocean and marine data Management) – FP7 (2011-2015)
• MyOcean 2 (Prototype Operational Continuity for the GMES Ocean Monitoring and Forecasting Service) – FP7 (2012-2014)
• MARINE CLEAN (Marine Debris Removal and Preventing Further Litter Entry) – program Eco Innovation – Eco Innovation (2011-2014)
• SMS (Sensing toxicants in Merine waters makes Sense using biosensors) – FP7 (2014-2017)
• INTERFACES (Support for training and career development of researchers) – FP7 (2014-2017)
• TRECORALA (Reefs And Koraligen Northern Adriatic: Evaluation And Sustainable Management In The Gulf Of Trieste) – Slovenia- Italy Cross-Border Cooperation Program (2012-2014)
• HAZADR (Strengthening common reaction capacity to fight sea pollution of oil, toxic
• and hazardous substances in Adriatic Sea) – IPA (2012-2015)
• SeaDataCloud (Pan-European infrastructure for ocean and marine data Management) - EU H2020 programme - (2016-2020) 
• EMODNET Chemistry 2 (European Marine Observation and Data Network ) – DG MARE (2013-2016) 
• EMODNET Chemistry 3 (European Marine Observation and Data Network ) – DG MARE (2017-2019) 
• EMODNET Data Ingestion (European Marine Observation and Data Network ) – DG MARE (2017-2019)

• Malačič V., Petelin B.: Climate circulation in the Gulf of Trieste (northern Adriatic). J. geophys. res., 2009, vol. 114, str. 1-15
• Grego M., De Troch M., Forte J., Malej A.: Main meiofauna taxa as an indicator for assessing the spatial and seasonal impact of fish farming. Mar. pollut. bull., 2009, št. 8, str. 1178-1186
• Kovač N., Kukovec K., Falnoga I., Mozetič P., Bajt O.: Carbon and nitrogen isotope composition of particulate organic matter in relation to mucilage formation in the Northern Adriatic sea. Mar. Chem., 2009, vol 114, str. 102-109
• Stopar K., Ramšak A., Trontelj P., Malej A.: Lack of genetic structure in the jellyfish Pelagia noctiluca (Cnidaria: Scyphozoa: Semaeostomeae) across European seas. 2010. Mol. phylogenet. evol. 57: str. 417-428
• MOZETIČ P., C. SOLIDORO, G. COSSARINI, G. SOCAL, R. PRECALI, J. FRANCÉ et al. Recent trends towards oligotrophication of the Northern Adriatic. 2010. Estuaries and coasts 33: str. 362-375,
• Drinovec L., Flander Putrle V., Knez M., Beran A., Berden Zrimec M.: Discrimination of marine algal taxonomic groups using delayed fluorescence spectroscopy. 2010. Environ. exp. bot. str. 1-12
• Mozetič P., Francé J., Kogovšek T., Talaber I., Malej A.: Plankton trends and community changes in a coastal sea (northern Adriatic): Bottom-up vs. Top-down control in relation to environmental drivers. 2012. Esturanine, Costal and Shelf science 115. str. 138-148
• Malačič V., Petelin B., Vodopivec M.: Topographic control of wind-driven circulation in the northern Adriatic. 2012. Journal of Geophysical Research, Volume 117, Issue C6, June 2012
• Tinta T, Kogovšek T, Malej A, Turk V.: Yellyfish modulate bacterial dynamic and community structure. 2012. PLoS ONE 7(6): e39274.
• PETELIN, Boris, KONONENKO, Igor, MALAČIČ, Vlado, KUKAR, Matjaž. Multi-level association rules and directed graphs for spatial data analysis. Expert systems with applications, 2013, vol. 40, issue 12, str. 4957-4970.  
• PETELIN, Boris, KONONENKO, Igor, MALAČIČ, Vlado, KUKAR, Matjaž. Dynamic fuzzy paths and cycles in multi-level directed graphs. Engineering applications of artificial intelligence, 2014, vol. 37, str. 194-206

Reference:

• CYTOTHREAT (Fate and effects of cytostatic pharmaceuticals in the environment and the identification of biomarkers for and improved risk assessment on environmental exposure) - – FP7 (2011-2014)
• LIFE Stop CyanoBloom (Innovative Technology for Cyanobacterial Bloom Control) – LIFE+ (2013-2016)

• Ding Y., Gan N., Li J., Sedmak B., Song L.: Hydrogen peroxide induces apoptotic-like cell death in Microcystis aeruginosa (Chroococcales, Cyanobacteria) in a dose-dependent manner. Phycologia, 2012, vol. 51, no. 5, str. 567-575,
• Sedmak B., Carmeli S., Pompe Novak M., Tušek-Žnidarič M., Grach-Pogrebinsky O., Eleršek T., Žužek M. C., Bubik A., Frangež R.: Cyanobacterial cytoskeleton immunostaining: the detection of cyanobacterial cell lysis induced by planktopeptin BL1125. J. plankton res., 2009, vol. 31, no. 11, str. 1321-1330. http://dx.doi.org/10.1093/plankt/fbp076,
• Štraser A., Filipič M., Gorenc I., Žegura, B.: The influence of cylindrospermopsin on oxidative DNA damage and apoptosis induction in HepG2 cells. Chemosphere (Oxford). [Print ed.], 2013, vol. 92, issue 1, str. 24-30
• Pezdirc M., Žegura B., Filipič M.: Genotoxicity and induction of DNA damage responsive genes by food-borne heterocyclic aromatic amines in human hepatoma HepG2 cells. Food chem. toxicol., 2013, vol. 59, str. 386-394
• Avberšek M., Žegura B., Filipič M., Uranjek Ževart N., Heath E.: Determination of estrogenic potential in waste water without sample extraction. J. hazard. mater. [Print ed.], 2013, vol. 260, str. 527-533
• Štraser A., Filipič M., Novak M., Žegura B.: Double strand breaks and cell-cycle arrest induced by the cyanobacterial toxin cylindrospermopsin in HepG2 cells. Mar. drugs, 2013, vol. 11, no. 8, str. 3077-3090. http://www.mdpi.com/1660-3397/11/8/3077
• Fic A., Žegura B., Sollner Dolenc M., Filipič M., Peterlin-Mašič L.: Mutagenicity and DNA damage of bisphenol A and its structural analogs = Mutagenost in poškodbe DNA povzročene z bisfenolom A in njegovimi strukturnimi analogi. Arh. hig. rada toksikol., 2013, vol. 66, no. 2, str. 189-200.
• http://hrcak.srce.hr/index.php?show=clanak&id_clanak_jezik=152768
• Blagus T., Zager V., Cemazar M., Sersa G., Kamensek U., Zegura B., Nunic J., Filipic M.: A cell-based biosensor system HepG2CDKN1A–DsRed for rapid and simple detection of genotoxic agents. Biosensors and Bioelectronics, 2014, vol. 61, str. 102-111

Reference:

• Q-DETECT (Quarantine Pest Detection for Use by National Plant Protection Organizations (NPPO) And Inspection Services ) – FP7 (2010-2013)
• VITISENS (Cost-Effective Hand-Held Device for Rapid In-Field Detection of Flavenscence Doree Phytoplasma in Grapevines) – FP7 (2011-2013)
• BICOPOLL (Targeted Precision Biocontrol and Pollination Enhancement in Organic Cropping Systems) - ERA-NET (2011-2014)
• GMO-SEEK (Development of Screening Methods for GMOs) - ERA-NET (2009-2011)
• GMO-VAL (Validation of Detection Methods for GMOs) – ERA-NET (2013-2015)
• INFECT-MET (Metrology For Monitoring Infectious Diseases, Antimicrobial Resistance, And Harmfull Microorganisms) – EURAMET (2012-2015)
• Bio-SiTrace (Traceability for biologically relevant molecules and entities) – EURAMET (2013-2016)
• DECHATLON (Development of Cost efficient Advanced DNA-based methods for specific Traceability issues and High Level On-site applicatioNs) – FP7 (2014-2016)

• Eriksson A., Anfora G., Lucchi A., Lanzo F., Virant-Doberlet M., et al. (2012) Exploitation of Insect Vibrational Signals Reveals a New Method of Pest Management. PLoS ONE 7(3): e32954.
• Soroker V., Suma P., La Pergola A., Cohen Y., Alchanatis V., Golomb O., Goldshtein E., Hetzroni A., Galazan L., Kontodimas D., Pontikakos C., Zorovic M., Brandstetter M.: Early detection and monitoring of the Red palm weevil: Approaches and challenges. Proceedings of the Palm pest Mediterranean conference, 2013. Nice, 16th-18th January
• Polajnar J., Svenšek D., Čokl A.: Resonance in herbaceous plant stems as a factor in vibrational communication of pentatomid bugs (Heteroptera: Pentatomidae). Journal of the Royal Society interface, 2012, vol. 9, no. 73, str. 1898-1907. http://dx.doi.org/10.1098/rsif.2011.0770
• Prezelj N., Nikolić P., Gruden K., Ravnikar M., Dermastia M.: Spatiotemporal distribution of flavescence dorée phytoplasma in grapevine. Plant Pathology, 2013, 62, 760–6.
• Lenarcic, R., Morisset, D., Mehle, N., Ravnikar, M.: Fast real-time detection of Potato spindle
• 462 tuber viroid by RT-LAMP. Plant Pathol. 2012, 62 (5), 1147-1156.
• Rupar M, Kogovšek P, Pompe-Novak M, Gutiérrez-Aguirre I, Delaunay A, Jacquot E, Ravnikar M.: Assessment of SNaPshot and single step RT-qPCR methods for discriminating Potato virus Y (PVY) subgroups. J Virol Methods. 2013 Apr;189(1):93-100
• Huber I.C., Block A., Sebah D., Debode F., Morisset D., Grohmann L., Berben G., Stebih D., Milavec M., Zel J., Busch U.: Development and Validation of Duplex, Triplex and Pentaplex Real-time PCR Screening Assays for the Detection of Genetically Modified Organisms in Food and Feed. 2013. J Agric Food ChemAug 24. [Epub ahead of print]
• Morisset D., Štebih D., Milavec M., Gruden K., Žel J.: Quantitative analysis of food and feed samples with droplet digital PCR. PloS one, 2013, vol. 8, issue 5, p. e62583
• Žel J., Milavec M., Morisset D., Plan D., Eede G.V.D, Gruden K.: How to reliably test for GMOs, (Springer briefs in food, health, and nutrition). New York [etc.]: Springer, 2012. X, 100 p., ilustr. ISBN 978-1-4614-1389-9.
• Milavec, M., Dobnik, D., Yang, L., Zhang, D., Gruden, K., Žel, J.: GMO quantification : valuable experience and insights for the future. Analytical and bioanalytical chemistry, ISSN 1618-2642, 2014, vol. , no. , 13 str., [in press], doi: 10.1007/s00216-014-8077-0.
• Morisset, D., Kralj Novak, P., Zupanič, D., Gruden, K., Lavrač, N., ŽEL, J.: GMOseek : a user friendly tool for optimized GMO testing. BMC bioinformatics, ISSN 1471-2105, avg. 2014, vol. 15, no. 258. http://dx.doi.org/10.1186/1471-2105-15-258, doi: 10.1186/1471-2105-15-258.
• Pavšič, J., Devonshire, A. S., Parkes, H. C., Schimmel, H., Foy, C. A., Karczmarczyk, M., Gutierrez-Aguirre, I., Honeyborne, I., Huggett, J. F., Mchugh, T. D., Milavec, M., Zeichhardt, H., Žel, J.: Standardising clinical measurements of bacteria and viruses using nucleic acid tests. Journal of clinical microbiology, ISSN 0095-1137, 2014, vol. , no. , 26 str., [in press], doi: 10.1128/JCM.02136-14.